Postgraduate research opportunities The use of machine learning in diagnosis of visceral leishmaniasis

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Key facts

  • Opens: Friday 13 November 2020
  • Number of places: 1
  • Duration: 36 Months

Overview

Leishmaniasis is a serious health threat. Diagnosis can be completed using different techniques but the gold standard is identifying parasites in stained samples from infected individuals. In this project we will look at using machine learning in parasite diagnosis
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Eligibility

2:1 Honours degree or overseas equivalent

THE Awards 2019: UK University of the Year Winner
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Project Details

Visceral leishmaniasis is a disease which causes considerable morbidity and mortality (1). Diagnosis can be carried out using molecular or immunological technique but the gold standard is identifying parasites in stained samples from infected individuals (2), which requires specialist training. However, it is now possible to train a computer to identify images using machine learning (3). In this project we will determine whether we can use machine learning to identify parasites in stained samples. We will also relate parasite burdens to specific antibody levels, using samples from Leishmania donovani infected hamsters. This project will be carried out in collaboration with Professor Revie (Department of Computing and Information Science). This project will be an excellent introduction to machine learning and how it can be used in clinical studies. The student on this project would be trained in a number of techniques including culture of parasites, use of IVIS imaging equipment, in vivo animal experiments, assessment of parasite burdens, analysis and presentation of data, and machine learning.

 

This is a multi-disciplinary project and would be good training for a student

Further information

  1. Sundar S, Singh OP, Chakravarty J. Visceral leishmaniasis elimination targets in India, strategies for preventing resurgence.
    Expert Rev Anti Infect Ther. 2018, 16:805-812.
    2. van Griensven J, Diro E. Visceral Leishmaniasis: Recent Advances in Diagnostics and Treatment Regimens. Infect Dis Clin North Am. 2019, 3:79-99.
    3. Xu J, Xue K, Zhang K. Current status and future trends of clinical diagnoses via image-based deep learning. Theranostics. 2019, 9:7556-7565.

 

 

 

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Funding details

Applicant will need to self-fund, find sponsorship for tuition and bench fees for duration of studies

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Supervisors

Dr Katharine Carter

Senior Lecturer
Strathclyde Institute of Pharmacy and Biomedical Sciences

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Professor Crawford Revie

Computer and Information Sciences

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Contact us

Primary Supervisor: Dr K. C Carter

Email: k.carter@strath.ac.uk

Webpage: https://www.strath.ac.uk/staff/carterkatharinedr/