Postgraduate research opportunities Spatial omics using histology, mass spectrometry imaging and spatial transcriptomics to investigate metabolites across tissue regions: Development of mathematical and AI algorithms for multimodal imaging

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Key facts

  • Opens: Friday 1 December 2023
  • Deadline: Friday 9 February 2024
  • Number of places: 1
  • Duration: 4 years
  • Funding: Equipment costs, Home fee, Stipend, Travel costs

Overview

This imaging project is an opportunity to undertake one of our new and exciting cross-disciplinary projects lying at the interface of mathematics and cancer medicine.
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Eligibility

Applicants should have, a first-class or good 2.1 honours degree (or equivalent) in a relevant discipline (i.e mathematics, physics or engineering-related disciplines with a background in applied mathematics and/or fluid mechanics). To be eligible for a full award a student must have no restrictions on how long they can stay in the UK and have been ordinarily resident in the UK for at least 3 years prior to the start of the studentship.

THE Awards 2019: UK University of the Year Winner
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Project Details

Imaging science is a relatively new branch of applied mathematics for emerging applications in almost all areas of cutting-edge research. The field is growing rapidly as new technologies are constantly driving the development.

This imaging project is an opportunity to undertake one of our new and exciting cross-disciplinary projects lying at the interface of mathematics and cancer medicine. The candidate does not need to have any knowledge in cancer diseases or medicine but will need strong mathematical knowledge through a degree in maths, or in computer science / physics / engineering with essential maths components, as well as good programming skills.

This multidisciplinary project aims to address a key step in designing new drugs and testing their efficacy is a comprehensive understanding of disease mechanisms at the single-cell and tissue context level. Working with teams from Astra-Zeneca, we investigate a range of biomedical imaging modalities and study cellular heterogeneity and the intricate interactions in disease microenvironments to chart cellular heterogeneity, complex tissue structures, and dynamic changes during diseases progression.

In terms of research and development, it addresses a set of outstanding challenges in both mathematical and AI fields. Working with applied mathematicians from Strathclyde and computing scientists from Queen’s University of Belfast, along with AI and data analysis teams from AZ, the successful student will get a thorough training in Mathematical Imaging (e.g variational models and diffeomorphic maps), Artificial Intelligence (neural networks and transfer learning),  Biomedical Research (Multimodal imaging, transcriptomics and H&E) and gain practical problems solving skills that are highly values in both Academia and Industries. Through the supervisors’ contacts and networks, the student will also benefit from and apply his or her skills to discussions and potential collaborators with other Universities including Universities of Birmingham and Liverpool and NHS hospitals such Clatterbridge Cancer Centre.  

Overall, this studentship is attractive because the topic under study is interesting and modern and a candidate has the flexibility to focus on all or just one of the key components:  maths, AI and biomedical analysis in terms of leading research. Apart from the collaboration opportunity with a top UK company, there is a ready secondary supervisor (Prof Styles) at QUB with complementary expertise and  also a large collaborating network.

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Funding details

This is a fully funded scholarship by the BBSRC NorthWestBio iCASE with Astra Zeneca Cambridge (covering both tuition fees and stipend plus iCASE top up payment for a UK student for 4 years) but the work will involve collaboration with the pharmaceutical company AZ (Astra-Zeneca) and the external supervisor Prof Styles in Queen’s University of Belfast.  Ample opportunities to visit the external supervisors and their teams. Find more general info about this opportunity.

While there is no funding in place for opportunities marked "unfunded", there are lots of different options to help you fund postgraduate research. Visit funding your postgraduate research for links to government grants, research councils funding and more, that could be available.

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Supervisors

Professor Ke Chen

Head Of Department
Mathematics and Statistics

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Additional supervisors: Dr A Lewis and Prof I Styles

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Apply

Apply online, quoting the project name “Spatial omics using histology, mass spectrometry imaging and spatial transcriptomics to investigate metabolites across tissue regions: Development of mathematical and AI algorithms for multimodal imaging”,

Number of places: 1

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Contact us

For further details, contact Professor Ke Chen, Email k.chen@strath.ac.uk.